Insight Journal (ISSN 2327-770X)

The Insight Journal is an Open Access on-line publication covering the domain of medical image processing and visualization.

The unique characteristics of the Insight Journal include:

- Open-access to articles, data, code, and reviews
- Open peer-review that invites discussion between reviewers and authors
- Emphasis on reproducible science via automated code compilation and testing
- Support for continuous revision of articles, code, and reviews

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A DICOM-based Software Infrastructure for Data Archiving

Dalal D., Jomier J., Aylward S.

In this paper , we propose an extension to the National Library of Medicine's Insight Segmentation and Registration Toolkit (ITK. www.itk.org) with a companion image access and archival system that merges the image transfer capabilities of DICOM with DSpace [...]

downloaded 2437 times, viewed 15965 times and 2 reviews.

Integration of Fuzzy Mathematical Morphology and Fuzzy Spatial Relationships into ITK

Atif J., Nempont O., Angelini E., Bloch I.

The aim of this paper is to present the integration of new filters computing fuzzy mathematical morphology and spatial relationships into ITK and to share our experience with the Open source community. Our implementation architecture follows the essential [...]

downloaded 2657 times, viewed 13751 times and no review.

A nonparametric, entropy-minimizing MRI tissue classification algorithm implementation using ITK

Tasdizen T., Awate S., Whitaker R.

This paper focuses on the role of open-source software in the development of a novel magnetic resonance image (MRI) tissue classification algorithm. Specifically, we describe the of use existing classes in the Insight Segmentation and Registration Toolkit [...]

downloaded 2348 times, viewed 14779 times and 2 reviews.

Cerebral Cortical Thickness Estimation using the TINA Open-Source Image Analysis Environment

Scott M.L.J., Bromiley P.A., Thacker N.A.

This paper gives an overview of the use and development of the TINA open-source medical image analysis environment, with respect to the determination of human cerebral cortical thickness estimation from magnetic resonance images. The ultimate aim of TINA is [...]

downloaded 2366 times, viewed 15571 times and 3 reviews.

IGSTK: Development Process and Project Management Best Practices for an Open Source Software Toolkit for Image-Guided Surgery Applications

Gary K., Blake B., Aylward S., Jomier J., Gobbi D., Kim H.S., Avila R., Ibanez L., Cleary K.

Open source technologies are increasing in popularity for software development. Many open source projects rely on skilled development teams whose members are distributed throughout the world. Often, agile development methods are employed by these teams, as [...]

downloaded 2192 times, viewed 13538 times and 2 reviews.

Segmentation of Skull-infiltrated Tumors Using ITK: Methods and Validation

Popovic A., Engelhardt M., Radermacher K.

Methods for segmentation of skull infiltrated tumors in Computed Tomography (CT) images using Insight Segmentation and Registration Toolkit ITK (www.itk.org) are presented. Pipelines of filters and algorithms from ITK are validated on the basis of [...]

downloaded 2456 times, viewed 17222 times and 2 reviews.

MORPHIAS: Molecular Phenotyping Image Analysis System

Henderson T., Marc R., Wang H.

Visualizing metabolic phenotypes, tracking phenotype dynamics, and screening molecular interventions all require comprehensive, quantitative measures of micromolecular patterns across cell classes. In this project we develop an easy-to-use interface that [...]

downloaded 1879 times, viewed 13014 times and 3 reviews.

A Framework for Algorithm Evaluation and Clinical Application Prototyping using ITK

Rexilius J., Spindler W., Jomier J., Koenig M., Hahn H., Link F., Peitgen H.

The usage of image processing has become an important and continuous growing field in medical imaging. Although a large amount of algorithms is available, only few are routinely applied within applications for clinical diagnosis support and treatment [...]

downloaded 3089 times, viewed 20314 times and no review.

The NLM-Mayo Image Collection: Common Access to Uncommon Data

Holmes D.R.I., Workman E.L., Robb R.A.

For over two decades, the National Library of Medicine (NLM) has provided support for the collection of biomedical image data for use throughout the biomedical image, visualization and analysis community. Data collected during the Visible Human Project has [...]

downloaded 2329 times, viewed 13346 times and 3 reviews.

The MITK Approach

Wolf I., Nolden M., Boettger T., Wegner I., Schoebinger M., Hastenteufel M., Heimann T., Meinzer H., Vetter M.

The Medical Imaging Interaction Toolkit (MITK) is an opensource toolkit for the development of interactive medical image analysis software. MITK is based on the open-source Insight Toolkit (ITK) and Visualization Toolkit (VTK) and extends them with features [...]

downloaded 4318 times, viewed 21443 times and 2 reviews.

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