Insight Journal (ISSN 2327-770X)

The Insight Journal is an Open Access on-line publication covering the domain of medical image processing and visualization.

The unique characteristics of the Insight Journal include:

- Open-access to articles, data, code, and reviews
- Open peer-review that invites discussion between reviewers and authors
- Emphasis on reproducible science via automated code compilation and testing
- Support for continuous revision of articles, code, and reviews

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Clustering Based Cardiac Resynchronization Therapy Prediction using Open Source Toolkit PRTools

Huang H., Shen L., Zhang R., Makedon F., Pearlman J.

We propose a novel framework at MICCAI 2005 to predict pacing sites in the left ventricle (LV) of a heart. This framework can be used to assist pacemaker implantation and programming in cardiac resynchronization therapy (CRT) that is a widely adopted therapy [...]

downloaded 2036 times, viewed 14757 times and no review.

BioImage Suite: An integrated medical image analysis suite

Papademetris X., Jackowski M., Rajeevan N., Constable R.T., Staib L.

BioImage Suite is an integrated image analysis software suite developed at Yale. It uses a combination of C++ and Tcl in the same fashion as that pioneered by the Visualization Toolkit (VTK) and it leverages both VTK and the Insight Toolkit. It has [...]

downloaded 2802 times, viewed 18320 times and 2 reviews.

A nonparametric, entropy-minimizing MRI tissue classification algorithm implementation using ITK

Tasdizen T., Awate S., Whitaker R.

This paper focuses on the role of open-source software in the development of a novel magnetic resonance image (MRI) tissue classification algorithm. Specifically, we describe the of use existing classes in the Insight Segmentation and Registration Toolkit [...]

downloaded 2504 times, viewed 15658 times and 2 reviews.

Cerebral Cortical Thickness Estimation using the TINA Open-Source Image Analysis Environment

Scott M.L.J., Bromiley P.A., Thacker N.A.

This paper gives an overview of the use and development of the TINA open-source medical image analysis environment, with respect to the determination of human cerebral cortical thickness estimation from magnetic resonance images. The ultimate aim of TINA is [...]

downloaded 2529 times, viewed 16612 times and 3 reviews.

Integration of Fuzzy Mathematical Morphology and Fuzzy Spatial Relationships into ITK

Atif J., Nempont O., Angelini E., Bloch I.

The aim of this paper is to present the integration of new filters computing fuzzy mathematical morphology and spatial relationships into ITK and to share our experience with the Open source community. Our implementation architecture follows the essential [...]

downloaded 2824 times, viewed 14396 times and no review.

IGSTK: Development Process and Project Management Best Practices for an Open Source Software Toolkit for Image-Guided Surgery Applications

Gary K., Blake B., Aylward S., Jomier J., Gobbi D., Kim H.S., Avila R., Ibanez L., Cleary K.

Open source technologies are increasing in popularity for software development. Many open source projects rely on skilled development teams whose members are distributed throughout the world. Often, agile development methods are employed by these teams, as [...]

downloaded 2356 times, viewed 14517 times and 2 reviews.

MORPHIAS: Molecular Phenotyping Image Analysis System

Henderson T., Marc R., Wang H.

Visualizing metabolic phenotypes, tracking phenotype dynamics, and screening molecular interventions all require comprehensive, quantitative measures of micromolecular patterns across cell classes. In this project we develop an easy-to-use interface that [...]

downloaded 2074 times, viewed 13855 times and 3 reviews.

The NLM-Mayo Image Collection: Common Access to Uncommon Data

Holmes D.R.I., Workman E.L., Robb R.A.

For over two decades, the National Library of Medicine (NLM) has provided support for the collection of biomedical image data for use throughout the biomedical image, visualization and analysis community. Data collected during the Visible Human Project has [...]

downloaded 2504 times, viewed 14345 times and 3 reviews.

A Framework for Algorithm Evaluation and Clinical Application Prototyping using ITK

Rexilius J., Spindler W., Jomier J., Koenig M., Hahn H., Link F., Peitgen H.

The usage of image processing has become an important and continuous growing field in medical imaging. Although a large amount of algorithms is available, only few are routinely applied within applications for clinical diagnosis support and treatment [...]

downloaded 3304 times, viewed 21322 times and no review.

Segmentation of Skull-infiltrated Tumors Using ITK: Methods and Validation

Popovic A., Engelhardt M., Radermacher K.

Methods for segmentation of skull infiltrated tumors in Computed Tomography (CT) images using Insight Segmentation and Registration Toolkit ITK (www.itk.org) are presented. Pipelines of filters and algorithms from ITK are validated on the basis of [...]

downloaded 2623 times, viewed 18174 times and 2 reviews.

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