The Insight Journal is an Open Access on-line publication covering the domain of medical image processing and visualization.

The unique characteristics of the Insight Journal include:

- Open-access to articles, data, code, and reviews
- Open peer-review that invites discussion between reviewers and authors
- Emphasis on reproducible science via automated code compilation and testing
- Support for continuous revision of articles, code, and reviews


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Tubular Geodesics using Oriented Flux: An ITK Implementation
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This document describes an ITK implementation of an interactive method for tracing curvilinear structures. The basic tools provided in this framework are an oriented flux-based tubularity measure and a geodesic path tracer that uses the fast marching [...]

An OpenCL implementation of the Gaussian pyramid and the resampler
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Nonrigid image registration is an important, but resource demanding and time-consuming task in medical image analysis. This limits its application in time-critical clinical routines. In this report we explore acceleration of two time-consuming parts of a [...]

Primal/Dual Mesh with Application to Triangular/Simplex Mesh and Delaunay/Voronoi
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This document describes an extension of ITK to handle both primal and dual meshes simultaneously. This paper describe in particular the data structure, an extension of itk::QuadEdgeMesh, a filter to compute and add to the the structure the dual of an existing [...]

Shape-based Interpolation of a Set of 2D Slices
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We implemented the shape-based interpolation method described by Raya and Udupa in 1990 for three-dimensional images, and created two standalone filters using the Insight Toolkit ITK. The image to be interpolated must be a 3D binary image which represents an [...]

Document Object Model based XML Handling in ITK
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The Insight Segmentation and Registration Toolkit (ITK) previously provided a framework for parsing Extensible Markup Language (XML) documents using the Simple API for XML (SAX) framework. While this programming model is memory efficient, it places most of [...]

Principal Components Analysis of Scalar, Vector, and Mesh Vertex Data
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This document describes a contribution to the Insight Toolkit intended to support the analysis of the principal components of data sets, optionally point data associated with the vertices of a mesh. This paper is accompanied with the source code, input data, [...]

Unwarping Echo Planar Images Using CMTK
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This document describes the workflow for unwarping echo planar MR images (EPI), in particular diffusion-weighted images, using an acquisition method with reversed phase encoding and the tools of the Computational Morphometry Toolkit (CMTK). This technique [...]

An implementation of the minimization of region-scalable fitting energy levelsets
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Intensity inhomogeneities often occur in medical images, especially when using magnetic resonance imaging. In these images, the standard Chan-and-Vese levelset segmentation method may not work properly, as it assumes constant intensity distributions for [...]

An ITK Implementation of Physics-based Non-rigid Registration Method
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As part of the ITK v4 project efforts, we have developed ITK filters for physics-based non-rigid registration (PBNRR), which satisfies the following requirements: account for tissue properties in the registration, improve accuracy compared to rigid [...]

Next Generation of the JAVA Image Science Toolkit (JIST) Visualization and Validation
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Modern medical imaging analyses often involve the concatenation of multiple steps, and neuroimaging analysis is no exception. The Java Image Science Toolkit (JIST) has provided a framework for both end users and engineers to synthesize processing modules into [...]

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Browse Journals
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Publication of the Month
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Escher's Ants as Metaphor: Topological Marching for the Well-Composed, Genus Zero Crowd
by Tustison N., Avants B., Siqueira M., Gee J.

Issues Accepting Submissions
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2017 January-December
248 days
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Most Recent Reviews
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Valuable contribution
A new implementation of...
by Dženan Zukić on 2016-07-28 15:40:50
Simple interface
A Skull-Stripping Filter for ITK
by Todd Jensen on 2016-05-30 08:00:15
A useful function, but with some build...
Walk In A Triangulation : Straight Walk
by Davis Vigneault on 2015-06-09 09:57:49
A meaningful contribution with...
Exact Geometrical Predicate: Point in...
by Davis Vigneault on 2015-06-09 11:10:14
Useful tool for kinetic analysis of PET...
InsightToolkit Kinetic Analysis...
by Matthew Mccormick on 2014-11-21 18:34:13
Working ITK3 and ITK4 version...
Implementation of local structure...
by Adrienne Mendrik on 2013-12-18 09:54:30
hi
An Open Source, Fast Ultrasound B-Mode...
by Dzyk Mike on 2013-07-07 02:49:36
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ISSN 2327-770X
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