Search


BioImage Suite: An integrated medical image analysis suite
starstarstarstarstar
BioImage Suite is an integrated image analysis software suite developed at Yale. It uses a combination of C++ and Tcl in the same fashion as that pioneered by the Visualization Toolkit (VTK) and it leverages both VTK and the Insight Toolkit. It has [...]

Cerebral Cortical Thickness Estimation using the TINA
  Open-Source Image Analysis Environment
starstarstarstarstar
This paper gives an overview of the use and development of the TINA open-source medical image analysis environment, with respect to the determination of human cerebral cortical thickness estimation from magnetic resonance images. The ultimate aim of TINA is [...]

BioImage Suite: An integrated medical image analysis suite: An update
starstarstarstarstar
BioImage Suite is an NIH-supported medical image analysis software suite developed at Yale. It leverages both the Visualization Toolkit (VTK) and the Insight Toolkit (ITK) and it includes many additional algorithms for image analysis especially in the areas [...]

Real-Time Ultrasound Image Analysis for the Insight Toolkit
starstarstarstarstar
We have successfully created a software environment in which ultrasound data can be manipulated by, ITK (the Insight Tool-Kit), in real-time. We were able to access each frame generated within the resident computer of a TerasonTM Ultrasound Machine, convert [...]

Next Generation of the JAVA Image Science Toolkit (JIST) Visualization and Validation
starstarstarstarstar
Modern medical imaging analyses often involve the concatenation of multiple steps, and neuroimaging analysis is no exception. The Java Image Science Toolkit (JIST) has provided a framework for both end users and engineers to synthesize processing modules into [...]

MORPHIAS: Molecular Phenotyping Image Analysis System
starstarstarstarstar
Visualizing metabolic phenotypes, tracking phenotype dynamics, and screening molecular interventions all require comprehensive, quantitative measures of micromolecular patterns across cell classes. In this project we develop an easy-to-use interface that [...]

MATITK: EXTENDING MATLAB WITH ITK
starstarstarstarstar
To facilitate the analysis of medical image data in research environment, MATITK is developed to allow ITK algorithms to be called in MATLAB. ITK is a powerful open-source image analysis toolkit, but it requires the knowledge of C++ to use it. With the help [...]

Combining labeled images with ITK
starstarstarstarstar
Combining some labeled images is a quite common and useful task in image analysis. That's something we may want to do to prepare the markers for a watershed from markers for example, or to write the output of several segmentations in a single file. This [...]

Biomarker Detection in Whole Slide Imaging based on Statistical Color Models
No opinion
This paper presents a technique for immunostaining biomarker detection in digital slides. We treat immunostaining detection as a color image analysis problem and build statistical color models using a large number of labeled positive and negative [...]

Image Kernel Convolution
starstarstarstarstar
Convolution is a basic operation in image analysis and the Insight Toolkit provides a well-framed mechanism for such operations (see Chapter 11 of the ITK Software Guide. The classes associated with this contribution are meant to simplify convolution [...]

Using and Visualizing Projective Cameras in VTK
starstarstarstarstar
This document presents a set of classes (vtkPhysicalCamera, vtkImageCamera) to enable a camera and an image acquired by that camera to be visualized in a 3D scene. Two situations where one would want to visualize camaras with associated images are range data [...]

A novel atlas-selection approach for multi-atlas based segmentation using the correlation of inter-atlas similarities
No opinion
Automated segmentation is a frequently applied task in the course of medical imaging. Furthermore, it is a substantial component of image-guided radiotherapy. Atlas based segmentation is one of the most frequently used approach for automated segmentation. [...]

Cumulative Gaussian Curve Fitter for Boundary Parameterization
starstarstarstarstar
We have previously developed an algorithm for locating boundaries in an image with sub-pixel resolution, as well as estimating boundary width and image intensity within the adjoining objects. The algorithm operates by finding the parameters of a cumulative [...]

Transitively Consistent and Unbiased Multi-Image Registration using Numerically Stable Transformation Synchronisation
No opinion
Transitive consistency of pairwise transformations is a desirable property of groupwise image registration procedures. The transformation synchronisation method (Bernard et al., 2015) is able to retrieve transitively consistent pairwise transformations from [...]

Unified framework for development, deployment and testing of image analysis algorithms
No opinion
Developing both graphical and command-line user interfaces for image analysis algorithms requires considerable effort. Generally developers provide limited to very rudimentary user interface controls to their users. These image analysis algorithms can only [...]

Applying Image Mining to Support Gestational Age Determination
No opinion
The gestational age (GA) determination is one of the most used measures to guide diagnostics of specialists in neonatology to guarantee the newborn surveillance. However, the currently available methods have been subject to a number of evaluations and [...]

Adaptations of MARACAS algorithm to the segmentation of the carotid bifurcation and stenosis quantification in CTA images
No opinion
This paper describes a 3D CTA image segmentation method submitted to the CLS09 contest (Carotid Lumen Segmentation and Stenosis Quantification) held in conjunction with the MICCAI 2009 conference. First, images are denoised to improve image quality and [...]

Coronary centerline tracking in CT images with use of an elastic model and image moments.
No opinion
This coronary-artery extraction method uses one initialization point per vessel. First, a mask is computed by use of a region-growing algorithm, which starts from the initial point and stops when no more connected voxels fall within an interactively defined [...]

I-DO: A Deformable Organisms framework for ITK
No opinion
Medical image analysis is an important problem relating to the study of various diseases. Since their inception to MICCAI in 2001, ''deformable organisms'' have emerged as a fruitful methodology with examples ranging from 2D corpus callosum segmentation [...]

Go-Go Gabor Gadgetry
No opinion
Although Gabor filtering is quite prevalent in the computer vision community for such tasks as texture segmentation and motion analysis, such capabilities are conspicuously absent from the Insight Toolkit. The contribution described in this paper attempts [...]

The NLM-Mayo Image Collection: Common Access to Uncommon Data
starstarstarstarstar
For over two decades, the National Library of Medicine (NLM) has provided support for the collection of biomedical image data for use throughout the biomedical image, visualization and analysis community. Data collected during the Visible Human Project has [...]

Computing Bone Morphometric Feature Maps from 3-Dimensional Images
No opinion
This document describes a new remote module implemented for the Insight Toolkit (ITK), itkBoneMorphometry. This module contains bone analysis filters that compute features from N-dimensional images that represent the internal architecture of bone. The [...]

Inverting deformation fields using a fixed point iteration scheme
starstarstarstarstar
Being able to quickly compute the inverse of a deformation field is often useful in the context of medical image analysis. While ITK supports this functionality, the current algorithms are slow and do not always yield accurate results. In this paper we [...]

VascuSynth: Vascular Tree Synthesis Software
starstarstarstarstar
In previous work, we presented an algorithm to synthesize volumetric images of vascular trees and generate the corresponding ground truth segmentations, bifurcation locations, branch properties, and tree hierarchy. In this work, we provide the software needed [...]

Flux driven medial curve extraction
starstarstarstarstar
In this document it is described the implementation of the flux driven automatic centerline extraction algorithm proposed by Bouix et al. in 2004. This is based on a skeletonisation algorithm initially proposed by Siddiqi et al. in 2002, using properties of [...]

2D/3D Multi-Modality Image Registration in Non-Destructive Evaluation
starstarstarstarstar
Non-destructive evaluation(NDE) is a group of analysis techniques used in industry to evaluate the property of a material, component or product without causing damage. Among all the techniques, radiology and thermography are two most common methods that are [...]

An OpenCL implementation of the Gaussian pyramid and the resampler
starstarstarstarstar
Nonrigid image registration is an important, but resource demanding and time-consuming task in medical image analysis. This limits its application in time-critical clinical routines. In this report we explore acceleration of two time-consuming parts of a [...]

An Intelligent cluster-based segmentation using Wavelet Features:Application to Medical Images
No opinion
Segmentation forms the onset for image analysis especially for medical images, making any abnormalities in tissues distinctly visible. Possible application includes the detection of tumor boundary in SPECT, MRI or electron MRI (EMRI). Nevertheless, tumors [...]

The Lung Tissue Research Consortium:  An extensive open database containing histological, clinical, and radiological data to study chronic lung disease
starstarstarstarstar
The Lung Tissue Research Consortium (LTRC) is an NHLBI sponsored project which is studying histological, radiological, and clinical data on patients with Chronic Obstructive Pulmonary Disease (COPD) and idiopathic pulmonary fibrosis (IPF). At completion, [...]

FusionViewer: An Open Source Toolkit for Viewing Multimodality Images
No opinion
FusionViewer is an open source and platform independent viewer that has been specifically designed for PET/CT image display. The combination of PET and CT images offers complementary functional and anatomical information. The application (FusionViewer) [...]

Simulink Libraries for Visual Programming of VTK and ITK
starstarstarstarstar
We have created open-source Simulink block libraries for ITK and VTK that allow pipelines for these toolkits to be built in a visual, drag-and-drop style within MATLAB. Each block contains an instance of an ITK or VTK class. Any block connections and [...]

A programming environment for the development of modular 3D biomedical image processing applications
starstarstarstarstar
ImageLib is a free object-oriented development environment destined to biomedical image processing. The software package contains a programming library (C++ language) and an MDI user interface (kernel). The major interest is to allow the creation of fully [...]

A Label Geometry Image Filter for Multiple Object Measurement
starstarstarstarstar
The itkLabelGeometryImageFilter is a new ITK filter that enables the measurement of geometric features of labeled objects. It calculates features similar to the "regionprops" command of Matlab. It is related to the itkLabelStatisticsImageFilter in that both [...]


Sort results by

Refine the search results

Keywords

Authors

main_flat
ISSN 2327-770X
Powered by Midas