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Towards an open-source pipeline for patient-specific neurosurgery simulation
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Surgery simulation is a technology based on interactive biomechanics as well as haptic and visual rendering for training novice surgeons. Another important component of a surgery simulator is the representation of a patient's anatomy in terms of simple [...]

Camino: Diffusion MRI reconstruction and processing
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Camino is an open-source, object-oriented software package for processing diffusion MRI data. Camino implements a data processing pipeline, which allows for easy scripting and flexible integration with other software. This paper summarises the features of [...]

Real-Time Smoke and Bleeding Simulation in Virtual Surgery
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We describe the implementation of smoke and bleeding simulation in the open source surgery simulator SPRING cite{montgomery02}, which is particularly targeted for minimally invasive surgery simulation. Many smoke and bleeding simulations offer high physical [...]

Collaborative Development of an open framework for medical simulation
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This paper investigates an Open Framework for Medical Simulation (named SOFA for Simulation Open Framework Architecture), and proposes ideas for structuring and supporting its expansion. Lately, through a joint effort between the Sim Group at CIMIT and the [...]

On the Generation of Ground Truth Data for Depth Reconstruction
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Acquiring data sets for stereo or multi-view reconstruction with known ground truth is costly and time consuming. Freely available data sets mostly focus on specific scene conditions and might not reflect the intended application scenario. We propose a GPU [...]

An Open Source Framework for Surgical Simulation
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In this work a software framework for the virtual surgical simulation is presented. Our environment ESQUI (The acronym comes from the Spanish "Entorno para Simulacion QUIrurgica", i.e. Framework for Surgical Simulation) is based on an open software and [...]

Fast image-based model of mitral valve closure for surgical planning
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Surgical repair of the mitral valve results in better outcomes than valve replacement, yet diseased valves are often replaced due to the technical difficulty of the repair process. A surgical planning system based on patient-specific medical images that [...]

OpenTissue - An Open Source Toolkit for Physics-Based Animation
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OpenTissue is a multidisciplinary, open source programming toolkit for physics-based simulation, collision detection, scientific visualization, and medical imaging. The toolkit was initiated in 2001, is driven by academia, and is used by several [...]

Inverse Nonlinear Finite Element Methods for Surgery Simulation and Image Guidance
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Nonlinear finite element methods are described in which cyclic organ motion is implied from 4D scan data. The equations of motion corresponding to an explicit integration of the total Lagrangian formulation are reversed, such that the sequence of node forces [...]

VascuSynth: Vascular Tree Synthesis Software
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In previous work, we presented an algorithm to synthesize volumetric images of vascular trees and generate the corresponding ground truth segmentations, bifurcation locations, branch properties, and tree hierarchy. In this work, we provide the software needed [...]


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ISSN 2327-770X
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