Insight Journal (ISSN 2327-770X) - An implementation of TDFFD and LDFFD algorithms

An implementation of TDFFD and LDFFD algorithms

Please use this identifier to cite or link to this publication: http://hdl.handle.net/10380/3345

Published in The Insight Journal - 2012 January-December.

Submitted by Mathieu De craene on 03-09-2012.

This paper describes the implementation of the LDFFD and TDFFD algorithms. Both quantify motion and deformation from an input image sequence by taking profit of the temporal dimension of velocity fields in the diffeomorphic registration framework to process the input image sequence as a single 3D+t object. The rationale behind these approaches is to formulate motion estimation in an image sequence as a multi-channel registration problem. This paper describes our implementation, currently following the original ITK registration framework without multi-threading and diffeomorphic registration framework.
Migration to ITKv4 will be addressed in future work. We also provide code for computing strain on a segmentation represented as a VTK polydata mesh. Program usages for LDFFD and TDFFD as well as strain quantification results are given for one 3D ultrasound image sequence acquired on a healthy volunteer.

Data

1 Dataset (153Mb)

Data.zip (153Mb)

Code

Automatic Testing Results by Insight-Journal Dashboard on Tue Jan 29 15:50:22 2013 for revision #1

expertise: 5 sensitivity: 5

This project had trouble building: 12 errors, 1 warnings
Click here for more details.

Go here to access the main testing dashboard.

Reviews

There is no review at this time. Be the first to review this publication!

Quick Comments

Comment by Altheqa Stone

https://www.altheqa-eg.com/stone-prices/
https://www.dekorishn-altheqa.com/decoration/
https://www.altheqa-eg.com/stone-types/
https://www.altheqa-stone.com/hashmi-stone-prices/
https://www.decoration-altheqa.com/stone-facades/
https://www.altheqa-stone.com/stone-2020/
https://www.dekorishn-altheqa.com/modern-stone-2/
https://www.dekorishn-altheqa.com/stone-houses/
https://www.altheqa-stone.com/altheqa-stone/
https://www.altheqa-eg.com/black-basalt/
https://www.decoration-altheqa.com/basalt-altheqa/
https://www.altheqa-eg.com/%D8%AA%D8%B1%D9%83%D9%8A%D8%A8-%D8%AD%D8%AC%D8%B1-%D9%87%D8%A7%D8%B4%D9%85%D9%89-%D9%87%D9%8A%D8%B5%D9%85-%D8%AE%D8%B7%D9%88%D8%A9-%D8%A8%D8%AE%D8%B7%D9%88%D8%A9/
https://www.altheqa-eg.com
https://www.altheqa-eg.com/%d8%a3%d9%87%d9%85-%d8%a7%d9%84%d8%b4%d8%b1%d9%83%d8%a7%d8%aa-%d9%84%d9%88%d8%b8%d9%8a%d9%81%d8%a9-%d8%aa%d8%b1%d9%83%d9%8a%d8%a8-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89-%d9%87%d9%8a%d8%b5/
https://www.altheqa-eg.com/%d9%85%d8%b9%d8%b1%d9%81%d8%a9-%d8%a3%d8%b3%d8%b9%d8%a7%d8%b1-%d8%a7%d9%84%d8%ad%d8%ac%d8%b1-%d9%81%d9%8a-%d9%85%d8%b5%d8%b1/
https://www.altheqa-eg.com/%d9%85%d8%b9%d8%b1%d9%81%d8%a9-%d8%a3%d8%b3%d8%b9%d8%a7%d8%b1-%d8%a7%d9%84%d8%ad%d8%ac%d8%b1-%d9%81%d9%8a-%d9%85%d8%b5%d8%b1/
https://www.altheqa-eg.com/%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89-%d8%a7%d8%b3%d8%b9%d8%a7%d8%b1-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89-%d9%87%d9%8a%d8%b5%d9%85/
https://www.altheqa-stone.com/
https://www.altheqa-stone.com/stone-decorations/
https://www.altheqa-stone.com/%d8%aa%d8%b9%d8%b1%d9%81-%d8%b9%d9%84%d9%89-%d8%a7%d8%b3%d8%b9%d8%a7%d8%b1-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89-%d9%87%d9%8a%d8%b5%d9%85/
https://www.altheqa-stone.com/export/
https://www.altheqa-stone.com/%d8%aa%d8%b9%d8%b1%d9%81-%d8%b9%d9%84%d9%89-%d8%a7%d8%b3%d8%b9%d8%a7%d8%b1-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89-%d9%87%d9%8a%d8%b5%d9%85/
https://www.altheqa-stone.com/%d8%b3%d8%b9%d8%b1-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89-%d9%87%d9%8a%d8%b5%d9%85-%d9%88%d8%b7%d8%b1%d9%8a%d9%82%d9%87-%d8%aa%d8%b1%d9%83%d9%8a%d8%a8%d8%a9/
https://www.altheqa-stone.com/%d8%a7%d8%b3%d8%b9%d8%a7%d8%b1-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89/
https://www.altheqa-stone.com/%D9%84%D9%85%D8%A7%D8%B0%D8%A7-%D9%88%D8%A7%D8%AC%D9%87%D8%A7%D8%AA-%D8%AD%D8%AC%D8%B1-%D9%87%D8%A7%D8%B4%D9%85%D9%89-%D8%AA%D9%83%D9%84%D9%81-%D8%A7%D9%85%D9%88%D8%A7%D9%84-%D9%83%D8%AB%D9%8A%D8%B1/
https://www.altheqa-stone.com/
https://www.altheqa-stone.com/category/hism-stone/exterior-decorations/
https://www.altheqa-stone.com/stone/
https://www.altheqa-stone.com/stone-altheqa/
https://www.altheqa-stone.com/hism-stone/
https://www.altheqa-stone.com/stone-2/
https://www.altheqa-stone.com/stone-3/
https://www.altheqa-stone.com/stone-decorations/
https://www.altheqa-stone.com/%d9%83%d9%84-%d9%85%d8%a7-%d9%87%d9%88-%d8%ac%d8%af%d9%8a%d8%af-%d9%81%d9%89-%d8%b9%d8%a7%d9%84%d9%85-%d8%a7%d9%84%d8%ad%d8%ac%d8%b1-%d8%a7%d9%84%d9%87%d8%a7%d8%b4%d9%85%d9%89/
https://www.altheqa-stone.com/%d8%a7%d8%b4%d9%83%d8%a7%d9%84-%d8%af%d9%8a%d9%83%d9%88%d8%b1%d8%a7%d8%aa-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89/
https://www.altheqa-stone.com/%d8%aa%d8%b9%d8%b1%d9%81-%d8%b9%d9%84%d9%89-%d8%a7%d8%b3%d8%b9%d8%a7%d8%b1-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89-%d9%87%d9%8a%d8%b5%d9%85/
https://www.altheqa-stone.com/%d8%a7%d9%81%d8%b6%d9%84-%d8%af%d9%8a%d9%83%d9%88%d8%b1%d8%a7%d8%aa-%d8%b9%d9%85%d8%a7%d8%b1%d8%a7%d8%aa-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89/
https://www.altheqa-stone.com/%d8%a7%d9%81%d8%b6%d9%84-%d8%b4%d8%b1%d9%83%d8%a7%d8%aa-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%89-%d9%81%d9%89-%d9%85%d8%b5%d8%b1/
https://www.altheqa-stone.com/%d8%aa%d8%b5%d9%85%d9%8a%d9%85%d8%a7%d8%aa-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89-%d8%b3%d9%88%d9%81-%d8%aa%d9%86%d8%a7%d9%84-%d8%a7%d8%b9%d8%ac%d8%a7%d8%a8%d9%83/
https://www.altheqa-stone.com/%d9%85%d9%87%d9%86%d8%af%d8%b3%d9%8a%d9%86-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89/
https://www.altheqa-stone.com/%d9%88%d8%a7%d8%ac%d9%87%d8%a7%d8%aa-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89%d8%a7%d8%b3%d8%b9%d8%a7%d8%b1-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89-%d9%87%d9%8a%d8%b5%d9%85/
https://www.altheqa-stone.com/export/
https://www.altheqa-stone.com/stone-altheqa/
https://www.altheqa-stone.com/%d9%88%d8%a7%d8%ac%d9%87%d8%a7%d8%aa-%d9%81%d9%84%d9%84-%d9%88%d9%85%d9%86%d8%a7%d8%b2%d9%84-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89/
https://www.altheqa-stone.com/%d9%85%d9%85%d9%8a%d8%b2%d8%a7%d8%aa-%d9%88%d8%b9%d9%8a%d9%88%d8%a8-%d8%a7%d9%84%d8%ad%d8%ac%d8%b1-%d8%a7%d9%84%d9%87%d8%a7%d8%b4%d9%85%d9%89-%d9%81%d9%89-%d9%85%d8%b5%d8%b1/
https://www.altheqa-stone.com/%d8%b3%d8%b9%d8%b1-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89-%d9%87%d9%8a%d8%b5%d9%85-%d9%88%d8%b7%d8%b1%d9%8a%d9%82%d9%87-%d8%aa%d8%b1%d9%83%d9%8a%d8%a8%d8%a9/
https://www.altheqa-stone.com/%d8%b4%d8%a7%d9%87%d8%af-%d8%a7%d8%ad%d8%af%d8%ab-%d8%af%d9%8a%d9%83%d9%88%d8%b1%d8%a7%d8%aa-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89/
https://www.altheqa-stone.com/%d8%a7%d8%b3%d8%b9%d8%a7%d8%b1-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89/
https://www.altheqa-stone.com/%d8%a7%d8%a8%d8%aa%d9%83%d8%a7%d8%b1-%d9%81%d9%89-%d8%a7%d9%84%d8%aa%d8%b5%d9%85%d9%8a%d9%85-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89/
https://www.altheqa-stone.com/%d9%88%d8%a7%d8%ac%d9%87%d8%a7%d8%aa-%d9%85%d9%86%d8%a7%d8%b2%d9%84-%d8%ae%d8%a7%d8%b1%d8%ac%d9%8a%d8%a9/
https://www.altheqa-stone.com/%d8%b4%d8%b1%d9%83%d8%a9-%d8%aa%d8%b5%d8%af%d9%8a%d8%b1-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89/
https://www.altheqa-stone.com/%d9%85%d9%82%d8%a7%d9%88%d9%84-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89-%d9%81%d9%89-%d9%85%d8%b5%d8%b1/
https://www.altheqa-stone.com/%d9%88%d8%a7%d8%ac%d9%87%d8%a7%d8%aa-%d8%ad%d8%ac%d8%b1-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89-%d9%87%d9%8a%d8%b5%d9%85/
https://www.altheqa-stone.com/category/hachmi-stone-facades/
https://www.altheqa-stone.com/category/hism-stone/
https://www.altheqa-stone.com/%d8%aa%d8%b5%d9%85%d9%8a%d9%85%d8%a7%d8%aa-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89-%d8%b3%d9%88%d9%81-%d8%aa%d9%86%d8%a7%d9%84-%d8%a7%d8%b9%d8%ac%d8%a7%d8%a8%d9%83/
https://www.altheqa-stone.com/%d8%a7%d9%81%d8%b6%d9%84-%d8%b4%d8%b1%d9%83%d8%a7%d8%aa-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%89-%d9%81%d9%89-%d9%85%d8%b5%d8%b1/
https://www.altheqa-stone.com/%d9%88%d8%a7%d8%ac%d9%87%d8%a7%d8%aa-%d9%85%d9%86%d8%a7%d8%b2%d9%84-%d9%88%d9%81%d9%84%d9%84-%d9%81%d8%a7%d8%ae%d8%b1%d8%a9-%d8%a8%d8%a7%d9%84%d8%ad%d8%ac%d8%b1-%d8%a7%d9%84%d9%87%d8%a7%d8%b4%d9%85/
https://www.altheqa-eg.com
https://www.altheqa-eg.com/category/hachemi-stone/
https://www.altheqa-eg.com/%d8%aa%d9%86%d9%81%d9%8a%d8%b0-%d9%88%d8%a7%d8%ac%d9%87%d8%a7%d8%aa-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89/
https://www.altheqa-eg.com/%d8%a3%d9%87%d9%85-%d8%a7%d9%84%d8%b4%d8%b1%d9%83%d8%a7%d8%aa-%d9%84%d9%88%d8%b8%d9%8a%d9%81%d8%a9-%d8%aa%d8%b1%d9%83%d9%8a%d8%a8-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89-%d9%87%d9%8a%d8%b5/
https://www.altheqa-eg.com/%d8%af%d9%8a%d9%83%d9%88%d8%b1%d8%a7%d8%aa-%d8%ae%d8%a7%d8%b1%d8%ac%d9%8a%d8%a9-%d8%a7%d9%81%d8%b6%d9%84-%d9%88%d8%a7%d8%ac%d9%87%d8%a7%d8%aa-%d9%81%d9%84%d9%84-%d9%88%d9%85%d9%86%d8%a7%d8%b2%d9%84/
https://www.altheqa-eg.com/%d9%85%d8%b9%d8%b1%d9%81%d8%a9-%d8%a3%d8%b3%d8%b9%d8%a7%d8%b1-%d8%a7%d9%84%d8%ad%d8%ac%d8%b1-%d9%81%d9%8a-%d9%85%d8%b5%d8%b1/
https://www.altheqa-eg.com/%d9%88%d8%a7%d8%ac%d9%87%d8%a7%d8%aa-%d9%81%d9%84%d9%84-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89-%d8%a8%d8%a7%d9%84%d8%b5%d9%88%d8%b1-%d9%88%d8%a7%d9%84%d9%81%d8%af%d9%8a%d9%88%d9%87%d8%a7/
https://www.altheqa-eg.com/%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89-%d9%87%d9%8a%d8%b5%d9%85-%d9%87%d9%88-%d8%a7%d9%84%d8%a7%d9%81%d8%b6%d9%84-%d8%af%d8%a7%d8%a6%d9%85%d8%a7-%d9%84%d9%85%d8%a7%d8%b0%d8%a7%d8%9f/
https://www.altheqa-eg.com/category/stone/
https://www.altheqa-eg.com/%d8%aa%d8%b1%d9%83%d9%8a%d8%a8-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89-%d9%87%d9%8a%d8%b5%d9%85-%d8%ae%d8%b7%d9%88%d8%a9-%d8%a8%d8%ae%d8%b7%d9%88%d8%a9/
https://www.altheqa-eg.com/%d8%a7%d8%ad%d8%af%d8%ab-%d9%85%d9%82%d8%a7%d9%84%d8%a7%d8%aa-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89/
https://www.altheqa-eg.com/%d9%88%d8%a7%d8%ac%d9%87%d8%a7%d8%aa-%d8%ac%d8%b0%d8%a7%d8%a8%d9%87-%d9%85%d9%86-%d8%a7%d9%84%d8%ad%d8%ac%d8%b1-%d8%a7%d9%84%d9%87%d8%a7%d8%b4%d9%85%d9%89/
https://www.altheqa-eg.com/%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89-%d8%a7%d8%b3%d8%b9%d8%a7%d8%b1-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89-%d9%87%d9%8a%d8%b5%d9%85/
https://www.altheqa-eg.com/%d8%a7%d8%b4%d9%83%d8%a7%d9%84-%d9%88%d8%a7%d9%86%d9%88%d8%a7%d8%b9-%d8%a7%d9%84%d8%ad%d8%ac%d8%b1-%d8%a7%d9%84%d9%87%d8%a7%d8%b4%d9%85%d9%89-%d8%a7%d9%84%d9%85%d8%aa%d9%88%d8%a7%d8%ac%d8%af%d9%87/
https://www.altheqa-eg.com/%d8%a7%d8%b4%d9%8a%d8%a7%d8%a1-%d9%8a%d8%ac%d8%a8-%d8%a7%d9%86-%d8%aa%d9%81%d8%b9%d9%84%d9%87%d8%a7-%d9%81%d9%89-%d9%88%d8%a7%d8%ac%d9%87%d8%a7%d8%aa-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89/
https://www.altheqa-eg.com/%d8%aa%d8%b5%d9%85%d9%8a%d9%85-%d8%af%d9%8a%d9%83%d9%88%d8%b1%d8%a7%d8%aa-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89/
https://www.altheqa-eg.com/%d9%88%d8%a7%d8%ac%d9%87%d8%a7%d8%aa-%d9%81%d9%84%d9%84-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89/
https://www.altheqa-eg.com/stone-altheqa/
https://www.altheqa-eg.com/%d8%b4%d8%b1%d9%83%d8%a9-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89/
https://www.pinterest.com/altheqa_stone/%D8%AA%D8%B5%D9%85%D9%8A%D9%85-%D9%88%D8%A7%D8%AC%D9%87%D8%A7%D8%AA-%D9%85%D9%86%D8%A7%D8%B2%D9%84-%D9%88%D8%B9%D9%85%D8%A7%D8%B1%D8%A7%D8%AA-%D8%A8%D8%A7%D9%84%D8%AD%D8%AC%D8%B1-%D8%A7%D9%84%D9%87%D8%A7%D8%B4%D9%85%D9%89-%D8%A8%D8%AA%D8%B5%D9%85%D9%8A%D9%85%D8%A7%D8%AA/
https://www.pinterest.com/decoration_altheqa/%D9%88%D8%A7%D8%AC%D9%87%D8%A7%D8%AA-%D8%AD%D8%AC%D8%B1-%D9%87%D8%A7%D8%B4%D9%85%D9%89/
https://www.facebook.com/alth8h/
https://www.pinterest.com/decoration_altheqa/home-design%D9%88%D8%A7%D8%AC%D9%87%D8%A7%D8%AA-%D8%AD%D8%AC%D8%B1-%D9%87%D8%A7%D8%B4%D9%85%D9%89-%D9%87%D9%8A%D8%B5%D9%85/
https://www.dekorishn-altheqa.com/%D8%A7%D8%B3%D8%B9%D8%A7%D8%B1-%D8%AD%D8%AC%D8%B1-%D9%87%D8%A7%D8%B4%D9%85%D9%89/

https://www.altheqa-eg.com/%d8%a3%d9%87%d9%85-%d8%a7%d9%84%d8%b4%d8%b1%d9%83%d8%a7%d8%aa-%d9%84%d9%88%d8%b8%d9%8a%d9%81%d8%a9-%d8%aa%d8%b1%d9%83%d9%8a%d8%a8-%d8%ad%d8%ac%d8%b1-%d9%87%d8%a7%d8%b4%d9%85%d9%89-%d9%87%d9%8a%d8%b5/

Resources


Download All
Download Paper , View Paper
Download Source code
Github

Statistics more


Global rating:
Review rating:	[review]
Code rating:
Views:	14363
Downloads:	4206
Paper Quality:
1 comment

Information more


Paper Id:	855
Categories:	Registration metrics, Transforms
Keywords:	diffeomorphism, temporal
Toolkits:	ITK, CMake, VTK
Revision:
Export citation:
Status:	Open for public review

Share

Linked Publications more


Diffeomorphic Demons Using ITK's Finite Difference Solver Hierarchy by Vercauteren T., Pennec X., Perchant A., Ayache N.
Reader/Writer for Analyze Object Maps for ITK by Hawley J., Johnson H.
Importing Contours from DICOM-RT Structure Sets by Dowling J., Malaterre M., Greer P.B., Salvado O.
A Label Geometry Image Filter for Multiple Object Measurement by Padfield D., Miller J.
Laplace Beltrami Filter on QuadEdge Meshes by Bowers M., Younes L.
Anisotropic Fast Marching in ITK by Mirebeau J.
A Skull-Stripping Filter for ITK by Bauer S., Fejes T., Reyes M.
ITK in Biomedical Research and Commercial Applications by McCormick M., Aylward S., Johnson H., Lowekamp B.
Scalable Simple Linear Iterative Clustering (SSLIC) Using a Generic and Parallel Approach by Lowekamp B., Chen D., Yaniv Z., Yoo T.
Computing Bone Morphometric Feature Maps from 3-Dimensional Images by Vimort J., McCormick M., Paniagua B.

View license

Loading license...

Send a message to the author