This paper describes a new tutorial book titled "An Introduction to Programming for Medical Image Analysis with the Visualization Toolkit." This book derived from a set of class handouts used in a biomedical engineering graduate seminar at Yale University. [...]

This paper describes the Datatree module of BioImage Suite, that allows for rapid and flexible reslicing of images based on a user-defined tree structure that organizes image and transformation data as well as electrode localizations, image landmarks, and [...]

BioImage Suite is an integrated image analysis software suite developed at Yale. It uses a combination of C++ and Tcl in the same fashion as that pioneered by the Visualization Toolkit (VTK) and it leverages both VTK and the Insight Toolkit. It has [...]

We present a VTK-based implementation of our non-parametric vessel detection method that identifies vascular structures using a polar neighborhood profile. To accelerate the computationally intensive parts of the algorithm, we leverage the hardware [...]

Developing both graphical and command-line user interfaces for image analysis algorithms requires considerable effort. Generally developers provide limited to very rudimentary user interface controls to their users. These image analysis algorithms can only [...]

BioImage Suite is an NIH-supported medical image analysis software suite developed at Yale. It leverages both the Visualization Toolkit (VTK) and the Insight Toolkit (ITK) and it includes many additional algorithms for image analysis especially in the areas [...]