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A Treatment Planning System for the Small Animal Radiation Research Platform (SARRP) based on 3D Slicer
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This paper describes the software integration of a treatment planning system (TPS), based on the open-source 3D Slicer package, with the Small Animal Radiation Research Platform (SARRP).The TPS is designed to enable researchers to replicate their clinical [...]

Multidimensional Arrays and the nArray Package
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At the Johns Hopkins University’s Engineering Research Center for Computer-Integrated Surgical Systems and Technology (ERC-CISST) laboratory, we have designed and developed a platformindependent C++ software package, called the nArray library, that provides [...]

Dose Painting with a Variable Collimator for the Small Animal Radiation Research Platform (SARRP)
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The goal of radiation treatment is to irradiate cancer cells (i.e., a target region) without destroying adjacent healthy tissue. Thus, it is advantageous to form the beam so that it best approximates the target, thereby reducing the amount of dose absorbed in [...]

MR Brain Segmentation using Decision Trees
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Segmentation of the human cerebrum from magnetic resonance images (MRI) into its component tissues has been a defining problem in medical imaging. Until recently, this has been solved as the tissue classification of the T1-weighted (T1-w) MRI, with numerous [...]

Laplace Beltrami Filter on QuadEdge Meshes
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A contribution to the Insight Toolkit intended to support the process of statistical analysis in Computational Anatomy. The methods included here operate on open or closed triagulated surfaces (represented by a QuadEdgeMesh). The filter assigns basis [...]

MUSiiC ToolKit 2.0: Bidirectional Real-time Software Framework for Advanced Interventional Ultrasound Research
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Ultrasound (US) imaging is a popular and convenient medical imaging modality thanks to its mobility, non-ionizing radiation, ease-of-use, and real-time acquisition. Conventional US imaging is frequently integrated with tracking systems and robotic systems in [...]

Automated Walks using Machine Learning for Segmentation
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This paper describes an automated algorithm for segmentation of brain structures (CSF, white matter, and gray matter) in MR images. We employ machine learning, i.e. k-Nearest Neighbors, of features derived from k-means, Canny edge detection, and Tourist [...]

Principal Components Analysis of Scalar, Vector, and Mesh Vertex Data
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This document describes a contribution to the Insight Toolkit intended to support the analysis of the principal components of data sets, optionally point data associated with the vertices of a mesh. This paper is accompanied with the source code, input data, [...]

An Open-Source Hardware and Software Platform for Telesurgical Robotics Research
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We present our work to develop a telerobotics research platform that provides complete access to all levels of control via open-source custom electronics and software. The electronics employs an FPGA to enable a centralized computation and distributed I/O [...]


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ISSN 2327-770X
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