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Zeiss (LSM) file format support
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This filter will allow support for file reading and writting in ITK for the Zeiss (LSM) file format.

BioRad file format support
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This filter will allow support for file reading and writting in ITK for the Bio-Rad file format.

The Role of Open-Source Software in the Study of Embryogenesis
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This paper focuses on the important role of open-source software in the development of a fully-automatic and accurate registration system for images of Quadrature Tomographic Microscopy. The system is correspondence-based, using the framework provided by [...]

Microscopy Image Analysis: Blob Segmentation using Geodesic Active Contours
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An Insight Toolkit (ITK) processing framework for blob segmentation with applications to microscopy images is presented in this paper. Our algorithm is a reļ¬nement of the work of Mosaliganti et al. [3] for splitting cell clusters. The basic idea is to [...]

A Streaming IO Base Class and Support for Streaming the MRC and VTK File Format
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This paper describes our contribution of three new classes to the Insight Toolkit community. We present a new ImageIO base class for streaming image file, along with two derived ImageIO classes for the VTK and the MRC file formats.

ITK-based Registration of Large Images from Light Microscopy: A Biomedical Application
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Inactivation of the retinoblastoma gene in mouse embryos results in morphological changes in the placenta, which has been shown to affect fetal survivability. The construction of a 3D virtual placenta aids in accurately quantifying structural changes [...]

BinShrink: A multi-resolution filter with cache efficient averaging.
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We present a new filter for the Insight Toolkit (ITK) for reducing the resolution of an image by an integer factor while averaging called BinShrink. This filter provides a new level of performance to ITK for reducing resolution and noise present in an image. [...]


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ISSN 2327-770X
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