
Search

This filter will allow support for file reading and writting in ITK for the Zeiss (LSM) file format.

This filter will allow support for file reading and writting in ITK for the Bio-Rad file format.

A Streaming IO Base Class and Support for Streaming the MRC and VTK File Format
Published in The Insight Journal
Published in The Insight Journal
This paper describes our contribution of three new classes to the Insight Toolkit community. We present a new ImageIO base class for streaming image file, along with two derived ImageIO classes for the VTK and the MRC file formats.

This paper focuses on the important role of open-source software in the development of a fully-automatic and accurate registration system for images of Quadrature Tomographic Microscopy. The system is correspondence-based, using the framework provided by [...]

Microscopy Image Analysis: Blob Segmentation using Geodesic Active Contours
Published in The Insight Journal
Published in The Insight Journal
An Insight Toolkit (ITK) processing framework for blob segmentation with applications to microscopy
images is presented in this paper. Our algorithm is a reļ¬nement of the work of Mosaliganti et al. [3] for
splitting cell clusters. The basic idea is to [...]

BinShrink: A multi-resolution filter with cache efficient averaging.
Published in The Insight Journal
Published in The Insight Journal
We present a new filter for the Insight Toolkit (ITK) for reducing the resolution of an image by an integer factor while averaging called BinShrink. This filter provides a new level of performance to ITK for reducing resolution and noise present in an image. [...]

ITK-based Registration of Large Images from Light Microscopy: A Biomedical Application
Published in The Insight Journal
Published in The Insight Journal
Inactivation of the retinoblastoma gene in mouse embryos results
in morphological changes in the placenta, which has been shown to
affect fetal survivability. The construction of a 3D virtual
placenta aids in accurately quantifying structural changes [...]
