Next Generation of the JAVA Image Science Toolkit (JIST) Visualization and Validation
Modern medical imaging analyses often involve the concatenation of multiple steps, and neuroimaging analysis is no exception. The Java Image Science Toolkit (JIST) has provided a framework for both end users and engineers to synthesize processing modules into [...]

BioImage Suite: An integrated medical image analysis suite
BioImage Suite is an integrated image analysis software suite developed at Yale. It uses a combination of C++ and Tcl in the same fashion as that pioneered by the Visualization Toolkit (VTK) and it leverages both VTK and the Insight Toolkit. It has [...]

FusionViewer: An Open Source Toolkit for Viewing Multimodality Images
No opinion
FusionViewer is an open source and platform independent viewer that has been specifically designed for PET/CT image display. The combination of PET and CT images offers complementary functional and anatomical information. The application (FusionViewer) [...]

A Voodoo Reader and Viewer for VTK
Voodoo is a popular, free structure from motion software package. It takes several, ordered images as input and computes the camera parameters of each image as well as a point cloud of an estimate of the 3D structure of the scene. This document presents a set [...]

Alternative Memory Models for ITK Images
By default ITK images use a contiguous memory model. This means pixel elements are stored in a single 1-D array, where each element is adjacent in memory to the previous element. However in some situations it is not desirable to use this memory model. This [...]

The SIGN: A dynamic and extensible software framework for Image-Guided Therapy
The software requirements for computer-aided navigation tools in image-guided therapy are becoming increasingly complex as a result of new possibilities in imaging and tracking hardware, novel application areas and regulatory restrictions. A new software [...]

CustusX: A Research Application for Image-Guided Therapy
No opinion
CustusX version 3 is an in-house application for research in image-guided therapy with a focus on intraoperative use and ultrasound imaging. It is built upon open source toolkits such as the Insight Toolkit (ITK), the Visualization Toolkit (VTK), Qt and [...]

IGSTK: Building High Quality Roads with Open Source Software
No opinion
This paper is a position statement on the benefits that an Open Source toolkit can bring to the field of image guided surgery. The particular example discussed here is the IGSTK toolkit. IGSTK is an open source software project designed for supporting the [...]

The NLM-Mayo Image Collection: Common Access to Uncommon Data
For over two decades, the National Library of Medicine (NLM) has provided support for the collection of biomedical image data for use throughout the biomedical image, visualization and analysis community. Data collected during the Visible Human Project has [...]

The BioImage Suite Datatree Tool: Enabling Flexible Realtime Surgical Visualizations
This paper describes the Datatree module of BioImage Suite, that allows for rapid and flexible reslicing of images based on a user-defined tree structure that organizes image and transformation data as well as electrode localizations, image landmarks, and [...]

MUSiiC ToolKit 2.0: Bidirectional Real-time Software Framework for Advanced Interventional Ultrasound Research
No opinion
Ultrasound (US) imaging is a popular and convenient medical imaging modality thanks to its mobility, non-ionizing radiation, ease-of-use, and real-time acquisition. Conventional US imaging is frequently integrated with tracking systems and robotic systems in [...]

BioImage Suite: An integrated medical image analysis suite: An update
BioImage Suite is an NIH-supported medical image analysis software suite developed at Yale. It leverages both the Visualization Toolkit (VTK) and the Insight Toolkit (ITK) and it includes many additional algorithms for image analysis especially in the areas [...]

An Architecture Validation Toolset for Ensuring Patient Safety in an Open Source Software Toolkit for Image-Guided Surgery Applications
No opinion
As open source software projects gain acceptance in mission critical domains of a technology-enabled society, they must adapt their lightweight processes and tools to address the quality needs of these domains. One such domain is technology-supported [...]

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