This document describes a user-steered method to interactively track centerlines of tubular objects in 3D space. The method is developed as a plug-in of ImageJ using Java language. To evaluate the tracking ability and tracking accuracy, this method has been [...]

Branches of tubular structures (vasculature, trachea, neuron, etc.) in medical images are critical for the topology of these structures. In many applications, It is very helpful to be able to decompose tubular structures and identify every individual [...]

Junctions of tubular structures (vasculature, trachea, neuron, etc) in medical images are critical for the topology of these structures. Identification of them is helpful in many applications. For example, quantification of geometric vascular features, [...]

This document describes an ITK implementation of an interactive method for tracing curvilinear structures. The basic tools provided in this framework are an oriented flux-based tubularity measure and a geodesic path tracer that uses the fast marching [...]

In previous work, we presented an algorithm to synthesize volumetric images of vascular trees and generate the corresponding ground truth segmentations, bifurcation locations, branch properties, and tree hierarchy. In this work, we provide the software needed [...]