The Insight Journal is an Open Access on-line publication covering the domain of medical image processing and visualization.

The unique characteristics of the Insight Journal include:

- Open-access to articles, data, code, and reviews
- Open peer-review that invites discussion between reviewers and authors
- Emphasis on reproducible science via automated code compilation and testing
- Support for continuous revision of articles, code, and reviews

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InsightToolkit Kinetic Analysis (itk::ka) Library
This paper describes how to compile and use the Insight Toolkit Kinetic Analysis library (itk::ka), to perform analysis of dynamic medical images, along with a brief overview of the library source code. A set of interfaces to facilitate application [...]

DICOM Spatial Transform IO in the Insight Toolkit
No opinion
This document describes a module that extends the Insight Toolkit, ITK, which reads DICOM Spatial Rogistration Object files in itk::Transform's. Currently, DICOM files are read by applying the DCMTK library as a backend. An itk::DCMTKTransformIO class can be [...]

Reproducible Research Training at Scipy 2014
No opinion
This article illustrates the process of performing reproducible research with existing open source tools.

A Flexible Variational Registration Framework
No opinion
In this article, we present an implementation of a flexible framework for non-parametric variational image registration, realized as part of ITK's finite difference solver hierarchy. In a variational registration setting, the transformation is found by [...]

A MultipleImageIterator for iterating over multiple images simultaneously
No opinion
Several applications such as multi-atlas segmentation require frequent iteration over multiple image volumes at the same time. Doing so with the regular ITK iterators is tedious and error prone as it requires updating each iterator at end of each iteration. [...]

Using TubeTK to Automatically Merge Volumes
No opinion
This article describes implementation of a CLI module to merge an image into the space of another adjacent image using the Insight Toolkit. The algorithm constructs a smoothly stitched image out of two or more smaller images. The overlapping regions of the [...]

STL file format MeshIO class for ITK
No opinion
This document describes the implementation of an ITK class to support the reading and writing of Meshes in STL file format. The Meshes are assumed to contain 2D manifolds embedded in a 3D space. In practice, it would be desirable to use this class mostly to [...]

BinShrink: A multi-resolution filter with cache efficient averaging.
No opinion
We present a new filter for the Insight Toolkit (ITK) for reducing the resolution of an image by an integer factor while averaging called BinShrink. This filter provides a new level of performance to ITK for reducing resolution and noise present in an image. [...]

The Image-based Vascular Analysis Toolkit (IvanTk)
No opinion
This document describes the Image-based Vascular Analysis Toolkit (IvanTk), a set of cross-platform C++ open source software libraries for the detection, extraction and modeling of vessels in 2D/3D medical images based on the Insight Toolkit. We provide an [...]

GPU and CPU implementation of Young - Van Vliet's Recursive Gaussian Smoothing Filter
This document describes an implementation for GPU and CPU of Young and Van Vliet's recursive Gaussian smoothing as an external module for the Insight Toolkit ITK, version 4.* In the absence of an OpenCL-capable platform, the code will run the CPU [...]

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Browse Journals

Publication of the Month
Exporting Contours to DICOM-RT Structure Set
by Gorthi S., Bach Cuadra M., Thiran J.

Issues Accepting Submissions
2014 January-December
13 days

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Quick, robust skull stripper
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ISSN 2327-770X
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