Probabilistic Tissue Characterization for Ultrasound Images

Curiale, Ariel Hernán1*,Vegas-Sánchez-Ferrero, Gonzalo,Aja-Fernández, Santiago
1.ETSI de Telecomunicación, Universidad de Valladolid, Spain
Abstract
Probabilistic Tissue Characterization for Ultrasound Images

Abstract

This document describes the derivation of the mixture models commonly used in the literature to describe the probabilistic nature of speckle: The Gaussian Mixture Model, the Rayleigh Mixture Model, the Gamma Mixture Model and the Generalized Gamma Mixture Model. New algorithms were implemented using the Insight Toolkit ITK for tissue characterization by means of a mixture model. The source code is composed of a set of reusable ITK filters and classes. In addition to an overview of our implementation, we provide the source code, input data, parameters and output data that the authors used for validating the different probabilistic tissue characterization variants described in this paper. This adheres to the fundamental principle that scientific publications must facilitate reproducibility of the reported results.

Keywords

UltrasoundTissue CharacterizationMixture Model
Manuscript
Source Code and Data

Source Code and Data

.gitignore38 BDataNormal_000.mhd352 BNormal_000.zraw4.5 MBTEE.mhd363 BTTE.mhd619 BTEE.zraw4.1 MBTTE.zraw2.5 MBtissueGGamma-Normal_000.mhd365 BtissueGGamma-Normal_000.zraw4.5 MBtissueGGamma-TEE.mhd377 BtissueGGamma-TEE.zraw6.9 MBtissueGGamma-TTE.mhd364 BtissueGGamma-TTE.zraw4.3 MBtissueGamma-Normal_000.mhd364 BtissueGamma-Normal_000.zraw4.5 MBtissueGamma-TEE.mhd376 BtissueGamma-TEE.zraw6.9 MBtissueGamma-TTE.mhd363 BtissueGamma-TTE.zraw4.3 MBtissueGaussian-Normal_000.mhd367 BtissueGaussian-TEE.mhd379 BtissueGaussian-Normal_000.zraw4.4 MBtissueGaussian-TEE.zraw6.3 MBtissueGaussian-TTE.mhd366 BtissueRayleigh-Normal_000.mhd367 BtissueGaussian-TTE.zraw3.9 MBtissueRayleigh-Normal_000.zraw4.5 MBtissueRayleigh-TEE.mhd379 BtissueRayleigh-TEE.zraw6.8 MBtissueRayleigh-TTE.mhd366 BtissueRayleigh-TTE.zraw4.3 MBsrcCMakeLists.txt5.1 KBImageCompare.cxx6.7 KBMixtureModel.cxx11.6 KBREADME.txt134 BlibitkExpectationMaximizationMixtureModelEstimator.h7.9 KBitkExpectationMaximizationMixtureModelEstimator.hxx12.3 KBitkGammaInitHelper.h2.4 KBitkGammaInitHelper.hxx6.8 KBitkGammaMLEFunction.h1.9 KBitkGammaMembershipFunction.h4.5 KBitkGammaMembershipFunction.hxx5.1 KBitkGammaMixtureModelComponent.h3.6 KBitkGammaMixtureModelComponent.hxx12.2 KBitkGaussianInitHelper.h2.5 KBitkGaussianInitHelper.hxx7.1 KBitkGaussianMembershipFunction.h5.9 KBitkGaussianMembershipFunction.hxx6.6 KBitkGaussianMixtureModelComponent.h4.1 KBitkGaussianMixtureModelComponent.hxx8.8 KBitkGeneralizedGammaExpectationMaximizationMixtureModelEstimator.h3.5 KBitkGeneralizedGammaExpectationMaximizationMixtureModelEstimator.hxx3.6 KBitkGeneralizedGammaInitHelper.h5 KBitkGeneralizedGammaInitHelper.hxx10.3 KBitkGeneralizedGammaMLEFunction.h6.8 KBitkGeneralizedGammaMembershipFunction.h5 KBitkGeneralizedGammaMembershipFunction.hxx5.9 KBitkGeneralizedGammaMixtureModelComponent.h3.9 KBitkGeneralizedGammaMixtureModelComponent.hxx11.3 KBitkLikelihoodMapImageFilter.h6.1 KBitkLikelihoodMapImageFilter.hxx2.1 KBitkMixtureModelComponentBase.h5.4 KBitkMixtureModelComponentBase.hxx3.9 KBitkMixtureModelInitHelper.h4.1 KBitkMixtureModelInitHelper.hxx2.2 KBitkMixtureModelMembershipFunctionBase.h5.6 KBitkRayleighInitHelper.h2.5 KBitkRayleighInitHelper.hxx6.7 KBitkRayleighMembershipFunction.h3.9 KBitkRayleighMembershipFunction.hxx3.5 KBitkRayleighMixtureModelComponent.h3.5 KBitkRayleighMixtureModelComponent.hxx8.1 KBitkTissueCharacterizationFilter.h7.9 KBitkTissueCharacterizationFilter.hxx7.7 KB

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